NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,731.3 |
| Mean read quality |
12.2 |
| Median read length |
3,668.0 |
| Median read quality |
13.1 |
| Number of reads |
6,555.0 |
| Read length N50 |
4,145.0 |
| STDEV read length |
1,308.7 |
| Total bases |
24,458,384.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
6555 (100.0%) 24.5Mb |
| >Q7 |
6555 (100.0%) 24.5Mb |
| >Q10 |
6157 (93.9%) 23.2Mb |
| >Q12 |
4332 (66.1%) 16.6Mb |
| >Q15 |
1605 (24.5%) 6.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.3 (4046) |
| 2 |
20.3 (5975) |
| 3 |
20.1 (5832) |
| 4 |
20.0 (5126) |
| 5 |
19.7 (2344) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8345 (11.2) |
| 2 |
8212 (12.4) |
| 3 |
8077 (14.3) |
| 4 |
7999 (12.0) |
| 5 |
7754 (14.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot