NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,594.2 |
| Mean read quality |
11.7 |
| Median read length |
3,564.0 |
| Median read quality |
13.2 |
| Number of reads |
18,134.0 |
| Read length N50 |
3,915.0 |
| STDEV read length |
1,162.5 |
| Total bases |
65,176,811.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
18134 (100.0%) 65.2Mb |
| >Q7 |
18134 (100.0%) 65.2Mb |
| >Q10 |
15139 (83.5%) 55.0Mb |
| >Q12 |
11375 (62.7%) 41.3Mb |
| >Q15 |
4995 (27.5%) 18.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.6 (2511) |
| 2 |
20.2 (3859) |
| 3 |
20.0 (2962) |
| 4 |
20.0 (5478) |
| 5 |
19.8 (3565) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12069 (10.7) |
| 2 |
11373 (11.9) |
| 3 |
11078 (9.3) |
| 4 |
9817 (16.7) |
| 5 |
9184 (11.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot