NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,068.7 |
| Mean read quality |
10.9 |
| Median read length |
2,975.0 |
| Median read quality |
11.5 |
| Number of reads |
21,927.0 |
| Read length N50 |
3,298.0 |
| STDEV read length |
1,156.2 |
| Total bases |
67,288,027.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
21927 (100.0%) 67.3Mb |
| >Q7 |
21927 (100.0%) 67.3Mb |
| >Q10 |
18420 (84.0%) 57.0Mb |
| >Q12 |
8462 (38.6%) 27.0Mb |
| >Q15 |
1052 (4.8%) 3.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.3 (2373) |
| 2 |
18.7 (3079) |
| 3 |
18.7 (4368) |
| 4 |
18.7 (3394) |
| 5 |
18.5 (2041) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
46999 (16.6) |
| 2 |
25858 (16.0) |
| 3 |
21149 (16.6) |
| 4 |
20330 (9.9) |
| 5 |
14734 (9.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot