NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,171.9 |
| Mean read quality |
10.6 |
| Median read length |
2,051.0 |
| Median read quality |
11.1 |
| Number of reads |
28,524.0 |
| Read length N50 |
2,363.0 |
| STDEV read length |
937.9 |
| Total bases |
61,952,351.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
28524 (100.0%) 62.0Mb |
| >Q7 |
28524 (100.0%) 62.0Mb |
| >Q10 |
22651 (79.4%) 49.0Mb |
| >Q12 |
8582 (30.1%) 18.8Mb |
| >Q15 |
623 (2.2%) 1.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.5 (2515) |
| 2 |
19.4 (1881) |
| 3 |
19.1 (1580) |
| 4 |
19.1 (1991) |
| 5 |
19.0 (1651) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
38991 (15.7) |
| 2 |
26297 (15.4) |
| 3 |
15638 (17.7) |
| 4 |
14086 (12.6) |
| 5 |
12034 (10.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot