NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,713.4 |
| Mean read quality |
12.1 |
| Median read length |
3,624.0 |
| Median read quality |
12.9 |
| Number of reads |
12,046.0 |
| Read length N50 |
3,980.0 |
| STDEV read length |
1,234.4 |
| Total bases |
44,731,095.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
12046 (100.0%) 44.7Mb |
| >Q7 |
12046 (100.0%) 44.7Mb |
| >Q10 |
11534 (95.7%) 43.1Mb |
| >Q12 |
7788 (64.7%) 28.9Mb |
| >Q15 |
2230 (18.5%) 8.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.0 (5026) |
| 2 |
19.8 (3449) |
| 3 |
19.7 (4851) |
| 4 |
19.6 (3551) |
| 5 |
19.5 (5016) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10254 (12.1) |
| 2 |
10009 (15.5) |
| 3 |
9890 (11.3) |
| 4 |
9336 (10.1) |
| 5 |
9063 (12.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot