NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,637.4 |
| Mean read quality |
11.0 |
| Median read length |
2,568.0 |
| Median read quality |
11.5 |
| Number of reads |
11,443.0 |
| Read length N50 |
2,825.0 |
| STDEV read length |
962.2 |
| Total bases |
30,179,233.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
11443 (100.0%) 30.2Mb |
| >Q7 |
11443 (100.0%) 30.2Mb |
| >Q10 |
9688 (84.7%) 25.8Mb |
| >Q12 |
4500 (39.3%) 12.1Mb |
| >Q15 |
627 (5.5%) 1.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.6 (3375) |
| 2 |
19.5 (1643) |
| 3 |
19.0 (2459) |
| 4 |
18.9 (5832) |
| 5 |
18.7 (3656) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
15763 (12.3) |
| 2 |
12847 (10.2) |
| 3 |
12598 (15.4) |
| 4 |
11734 (9.8) |
| 5 |
9734 (9.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot