NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,283.9 |
| Mean read quality |
11.0 |
| Median read length |
3,239.0 |
| Median read quality |
11.6 |
| Number of reads |
8,511.0 |
| Read length N50 |
3,553.0 |
| STDEV read length |
1,064.3 |
| Total bases |
27,948,911.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
8511 (100.0%) 27.9Mb |
| >Q7 |
8511 (100.0%) 27.9Mb |
| >Q10 |
7546 (88.7%) 25.0Mb |
| >Q12 |
3426 (40.3%) 11.8Mb |
| >Q15 |
159 (1.9%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.1 (3524) |
| 2 |
19.9 (4734) |
| 3 |
19.4 (3919) |
| 4 |
18.9 (4038) |
| 5 |
18.7 (3058) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10003 (18.4) |
| 2 |
9553 (11.1) |
| 3 |
9393 (13.4) |
| 4 |
8566 (10.8) |
| 5 |
7959 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot