NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,681.5 |
| Mean read quality |
11.4 |
| Median read length |
2,740.0 |
| Median read quality |
12.7 |
| Number of reads |
2,747.0 |
| Read length N50 |
3,015.0 |
| STDEV read length |
1,005.3 |
| Total bases |
7,366,000.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2747 (100.0%) 7.4Mb |
| >Q7 |
2747 (100.0%) 7.4Mb |
| >Q10 |
2235 (81.4%) 6.3Mb |
| >Q12 |
1576 (57.4%) 4.5Mb |
| >Q15 |
588 (21.4%) 1.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.6 (3393) |
| 2 |
19.1 (3553) |
| 3 |
18.4 (3961) |
| 4 |
18.2 (3324) |
| 5 |
18.2 (2125) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5697 (14.9) |
| 2 |
5641 (8.1) |
| 3 |
5426 (10.3) |
| 4 |
5402 (11.5) |
| 5 |
5338 (11.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot