NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,243.2 |
| Mean read quality |
11.9 |
| Median read length |
3,225.0 |
| Median read quality |
12.7 |
| Number of reads |
1,280.0 |
| Read length N50 |
3,475.0 |
| STDEV read length |
1,014.8 |
| Total bases |
4,151,323.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1280 (100.0%) 4.2Mb |
| >Q7 |
1280 (100.0%) 4.2Mb |
| >Q10 |
1196 (93.4%) 3.9Mb |
| >Q12 |
802 (62.7%) 2.6Mb |
| >Q15 |
186 (14.5%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.0 (3097) |
| 2 |
18.0 (3707) |
| 3 |
17.9 (4781) |
| 4 |
17.9 (3430) |
| 5 |
17.9 (2597) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9586 (14.0) |
| 2 |
8028 (10.9) |
| 3 |
7904 (13.4) |
| 4 |
7779 (10.8) |
| 5 |
6947 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot