NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,907.1 |
| Mean read quality |
10.4 |
| Median read length |
3,015.0 |
| Median read quality |
10.9 |
| Number of reads |
1,149.0 |
| Read length N50 |
3,388.0 |
| STDEV read length |
1,272.6 |
| Total bases |
3,340,296.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1149 (100.0%) 3.3Mb |
| >Q7 |
1149 (100.0%) 3.3Mb |
| >Q10 |
762 (66.3%) 2.4Mb |
| >Q12 |
407 (35.4%) 1.3Mb |
| >Q15 |
157 (13.7%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.6 (3202) |
| 2 |
17.9 (4386) |
| 3 |
17.9 (4556) |
| 4 |
17.7 (3244) |
| 5 |
17.7 (3760) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6544 (13.4) |
| 2 |
6448 (10.0) |
| 3 |
6184 (13.0) |
| 4 |
6150 (12.2) |
| 5 |
6035 (11.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot