NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,097.3 |
| Mean read quality |
13.0 |
| Median read length |
2,043.0 |
| Median read quality |
14.1 |
| Number of reads |
560,724.0 |
| Read length N50 |
2,167.0 |
| STDEV read length |
507.3 |
| Total bases |
1,176,010,560.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
560724 (100.0%) 1176.0Mb |
| >Q7 |
560724 (100.0%) 1176.0Mb |
| >Q10 |
546302 (97.4%) 1146.4Mb |
| >Q12 |
469135 (83.7%) 987.7Mb |
| >Q15 |
178112 (31.8%) 383.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.5 (2375) |
| 2 |
20.3 (2139) |
| 3 |
20.2 (2493) |
| 4 |
20.1 (2316) |
| 5 |
20.1 (1934) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8280 (13.3) |
| 2 |
7763 (9.4) |
| 3 |
7633 (16.8) |
| 4 |
7616 (12.4) |
| 5 |
7509 (9.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot