NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,636.4 |
| Mean read quality |
12.0 |
| Median read length |
1,673.5 |
| Median read quality |
12.9 |
| Number of reads |
220.0 |
| Read length N50 |
2,747.0 |
| STDEV read length |
1,238.5 |
| Total bases |
359,999.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
220 (100.0%) 0.4Mb |
| >Q7 |
220 (100.0%) 0.4Mb |
| >Q10 |
206 (93.6%) 0.3Mb |
| >Q12 |
156 (70.9%) 0.3Mb |
| >Q15 |
16 (7.3%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.1 (3287) |
| 2 |
15.9 (2884) |
| 3 |
15.8 (690) |
| 4 |
15.7 (2331) |
| 5 |
15.7 (2421) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6296 (10.4) |
| 2 |
5288 (14.5) |
| 3 |
5269 (14.2) |
| 4 |
5243 (12.7) |
| 5 |
4437 (15.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot