NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,611.4 |
| Mean read quality |
12.3 |
| Median read length |
3,444.0 |
| Median read quality |
13.3 |
| Number of reads |
6,790.0 |
| Read length N50 |
3,782.0 |
| STDEV read length |
1,242.1 |
| Total bases |
24,521,191.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
6790 (100.0%) 24.5Mb |
| >Q7 |
6790 (100.0%) 24.5Mb |
| >Q10 |
6514 (95.9%) 23.5Mb |
| >Q12 |
5133 (75.6%) 18.6Mb |
| >Q15 |
985 (14.5%) 3.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.7 (6020) |
| 2 |
18.7 (3757) |
| 3 |
18.6 (2745) |
| 4 |
18.3 (3337) |
| 5 |
18.3 (6570) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9446 (15.6) |
| 2 |
9442 (14.4) |
| 3 |
9354 (13.8) |
| 4 |
9244 (11.9) |
| 5 |
8889 (13.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot