NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,588.2 |
| Mean read quality |
11.0 |
| Median read length |
432.0 |
| Median read quality |
11.3 |
| Number of reads |
1,112.0 |
| Read length N50 |
3,685.0 |
| STDEV read length |
1,721.9 |
| Total bases |
1,766,059.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1112 (100.0%) 1.8Mb |
| >Q7 |
1112 (100.0%) 1.8Mb |
| >Q10 |
935 (84.1%) 1.7Mb |
| >Q12 |
407 (36.6%) 1.3Mb |
| >Q15 |
102 (9.2%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.0 (2691) |
| 2 |
17.4 (4861) |
| 3 |
17.3 (2535) |
| 4 |
17.0 (4827) |
| 5 |
17.0 (4797) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6853 (13.6) |
| 2 |
6735 (9.5) |
| 3 |
6549 (14.7) |
| 4 |
6455 (11.3) |
| 5 |
6257 (13.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot