NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,691.0 |
| Mean read quality |
12.1 |
| Median read length |
2,139.0 |
| Median read quality |
13.0 |
| Number of reads |
729.0 |
| Read length N50 |
2,571.0 |
| STDEV read length |
1,091.6 |
| Total bases |
1,232,709.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
729 (100.0%) 1.2Mb |
| >Q7 |
729 (100.0%) 1.2Mb |
| >Q10 |
676 (92.7%) 1.2Mb |
| >Q12 |
462 (63.4%) 1.0Mb |
| >Q15 |
185 (25.4%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.2 (2526) |
| 2 |
18.0 (2613) |
| 3 |
17.9 (2593) |
| 4 |
17.6 (1920) |
| 5 |
17.6 (2391) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4013 (15.4) |
| 2 |
3588 (13.3) |
| 3 |
3572 (16.0) |
| 4 |
3541 (12.4) |
| 5 |
3507 (15.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot