NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,212.3 |
| Mean read quality |
12.7 |
| Median read length |
2,135.0 |
| Median read quality |
13.7 |
| Number of reads |
98,592.0 |
| Read length N50 |
2,275.0 |
| STDEV read length |
576.1 |
| Total bases |
218,111,718.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
98592 (100.0%) 218.1Mb |
| >Q7 |
98592 (100.0%) 218.1Mb |
| >Q10 |
95778 (97.1%) 212.0Mb |
| >Q12 |
79629 (80.8%) 176.9Mb |
| >Q15 |
20041 (20.3%) 45.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.4 (2208) |
| 2 |
19.7 (2813) |
| 3 |
19.5 (1796) |
| 4 |
19.4 (1975) |
| 5 |
19.4 (3465) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8492 (9.6) |
| 2 |
8438 (12.9) |
| 3 |
8052 (9.7) |
| 4 |
7367 (12.4) |
| 5 |
7000 (9.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot