NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,056.2 |
| Mean read quality |
12.6 |
| Median read length |
3,122.0 |
| Median read quality |
13.7 |
| Number of reads |
27,100.0 |
| Read length N50 |
3,327.0 |
| STDEV read length |
942.0 |
| Total bases |
82,823,708.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
27100 (100.0%) 82.8Mb |
| >Q7 |
27100 (100.0%) 82.8Mb |
| >Q10 |
26052 (96.1%) 80.6Mb |
| >Q12 |
21304 (78.6%) 67.9Mb |
| >Q15 |
5666 (20.9%) 18.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.8 (2208) |
| 2 |
19.3 (3637) |
| 3 |
19.1 (3438) |
| 4 |
19.0 (4055) |
| 5 |
18.9 (3236) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9569 (12.0) |
| 2 |
9299 (14.3) |
| 3 |
8561 (9.6) |
| 4 |
7649 (13.5) |
| 5 |
7525 (14.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot