NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,854.4 |
| Mean read quality |
12.4 |
| Median read length |
2,886.0 |
| Median read quality |
13.5 |
| Number of reads |
11,836.0 |
| Read length N50 |
3,256.0 |
| STDEV read length |
1,162.4 |
| Total bases |
33,784,323.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
11836 (100.0%) 33.8Mb |
| >Q7 |
11836 (100.0%) 33.8Mb |
| >Q10 |
11330 (95.7%) 32.8Mb |
| >Q12 |
8969 (75.8%) 27.3Mb |
| >Q15 |
2190 (18.5%) 6.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.6 (3214) |
| 2 |
19.2 (3667) |
| 3 |
18.9 (2826) |
| 4 |
18.7 (2848) |
| 5 |
18.7 (2570) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11014 (12.0) |
| 2 |
9503 (9.8) |
| 3 |
7553 (12.3) |
| 4 |
6932 (14.1) |
| 5 |
6678 (15.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot