NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,301.9 |
| Mean read quality |
12.6 |
| Median read length |
4,480.0 |
| Median read quality |
13.8 |
| Number of reads |
86.0 |
| Read length N50 |
4,878.0 |
| STDEV read length |
1,609.1 |
| Total bases |
369,965.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
86 (100.0%) 0.4Mb |
| >Q7 |
86 (100.0%) 0.4Mb |
| >Q10 |
81 (94.2%) 0.4Mb |
| >Q12 |
70 (81.4%) 0.3Mb |
| >Q15 |
13 (15.1%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (5007) |
| 2 |
16.3 (4313) |
| 3 |
16.3 (4316) |
| 4 |
16.2 (4187) |
| 5 |
15.9 (1058) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8069 (13.5) |
| 2 |
8035 (14.1) |
| 3 |
7379 (10.4) |
| 4 |
7278 (10.8) |
| 5 |
6701 (14.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot