NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,560.6 |
| Mean read quality |
11.9 |
| Median read length |
1,608.0 |
| Median read quality |
12.8 |
| Number of reads |
2,571.0 |
| Read length N50 |
1,803.0 |
| STDEV read length |
687.8 |
| Total bases |
4,012,240.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2571 (100.0%) 4.0Mb |
| >Q7 |
2571 (100.0%) 4.0Mb |
| >Q10 |
2388 (92.9%) 3.8Mb |
| >Q12 |
1670 (65.0%) 2.9Mb |
| >Q15 |
236 (9.2%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.1 (1527) |
| 2 |
17.8 (1416) |
| 3 |
17.5 (2187) |
| 4 |
17.5 (1690) |
| 5 |
17.4 (1901) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3476 (12.4) |
| 2 |
3472 (9.8) |
| 3 |
3281 (12.4) |
| 4 |
3259 (13.5) |
| 5 |
3192 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot