NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
640.4 |
| Mean read quality |
10.3 |
| Median read length |
424.0 |
| Median read quality |
10.7 |
| Number of reads |
2,692.0 |
| Read length N50 |
544.0 |
| STDEV read length |
590.4 |
| Total bases |
1,723,829.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2692 (100.0%) 1.7Mb |
| >Q7 |
2692 (100.0%) 1.7Mb |
| >Q10 |
2016 (74.9%) 1.4Mb |
| >Q12 |
512 (19.0%) 0.7Mb |
| >Q15 |
52 (1.9%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.9 (1988) |
| 2 |
16.8 (1559) |
| 3 |
16.7 (1097) |
| 4 |
16.7 (1640) |
| 5 |
16.6 (2245) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5594 (13.0) |
| 2 |
5366 (12.6) |
| 3 |
4663 (13.9) |
| 4 |
4567 (12.8) |
| 5 |
4551 (14.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot