NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,669.0 |
| Mean read quality |
12.6 |
| Median read length |
2,670.0 |
| Median read quality |
13.6 |
| Number of reads |
923.0 |
| Read length N50 |
2,978.0 |
| STDEV read length |
808.7 |
| Total bases |
2,463,476.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
923 (100.0%) 2.5Mb |
| >Q7 |
923 (100.0%) 2.5Mb |
| >Q10 |
898 (97.3%) 2.4Mb |
| >Q12 |
732 (79.3%) 2.0Mb |
| >Q15 |
185 (20.0%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.2 (2978) |
| 2 |
18.2 (3300) |
| 3 |
17.8 (1751) |
| 4 |
17.6 (3419) |
| 5 |
17.5 (3282) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4986 (13.6) |
| 2 |
4970 (13.5) |
| 3 |
4964 (14.6) |
| 4 |
4950 (13.4) |
| 5 |
4892 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot