NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,803.4 |
| Mean read quality |
11.9 |
| Median read length |
1,997.0 |
| Median read quality |
13.0 |
| Number of reads |
6,170.0 |
| Read length N50 |
2,318.0 |
| STDEV read length |
961.3 |
| Total bases |
11,126,765.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
6170 (100.0%) 11.1Mb |
| >Q7 |
6170 (100.0%) 11.1Mb |
| >Q10 |
5611 (90.9%) 10.7Mb |
| >Q12 |
3860 (62.6%) 8.6Mb |
| >Q15 |
1002 (16.2%) 2.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.7 (1848) |
| 2 |
18.4 (2243) |
| 3 |
18.2 (1691) |
| 4 |
17.9 (2946) |
| 5 |
17.8 (2107) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6356 (14.6) |
| 2 |
6277 (13.3) |
| 3 |
6217 (14.7) |
| 4 |
6192 (14.4) |
| 5 |
5375 (14.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot