NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,010.6 |
| Mean read quality |
11.6 |
| Median read length |
2,267.5 |
| Median read quality |
12.4 |
| Number of reads |
306.0 |
| Read length N50 |
2,685.0 |
| STDEV read length |
1,141.3 |
| Total bases |
615,241.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
306 (100.0%) 0.6Mb |
| >Q7 |
306 (100.0%) 0.6Mb |
| >Q10 |
286 (93.5%) 0.6Mb |
| >Q12 |
169 (55.2%) 0.4Mb |
| >Q15 |
19 (6.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.4 (1190) |
| 2 |
16.3 (3925) |
| 3 |
15.8 (3013) |
| 4 |
15.7 (2687) |
| 5 |
15.7 (1982) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5626 (14.4) |
| 2 |
4764 (10.3) |
| 3 |
4380 (14.2) |
| 4 |
4277 (13.8) |
| 5 |
4271 (14.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot