NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,196.2 |
| Mean read quality |
12.2 |
| Median read length |
2,158.0 |
| Median read quality |
13.1 |
| Number of reads |
22,043.0 |
| Read length N50 |
2,301.0 |
| STDEV read length |
554.5 |
| Total bases |
48,411,635.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
22043 (100.0%) 48.4Mb |
| >Q7 |
22043 (100.0%) 48.4Mb |
| >Q10 |
21120 (95.8%) 46.4Mb |
| >Q12 |
16046 (72.8%) 35.4Mb |
| >Q15 |
2275 (10.3%) 5.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.0 (1567) |
| 2 |
18.8 (2217) |
| 3 |
18.8 (2105) |
| 4 |
18.5 (2973) |
| 5 |
18.5 (2833) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6232 (9.6) |
| 2 |
6176 (12.2) |
| 3 |
6163 (11.8) |
| 4 |
5994 (11.6) |
| 5 |
5783 (11.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot