NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,433.2 |
| Mean read quality |
11.6 |
| Median read length |
1,493.0 |
| Median read quality |
12.6 |
| Number of reads |
2,053.0 |
| Read length N50 |
1,703.0 |
| STDEV read length |
667.9 |
| Total bases |
2,942,291.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2053 (100.0%) 2.9Mb |
| >Q7 |
2053 (100.0%) 2.9Mb |
| >Q10 |
1855 (90.4%) 2.8Mb |
| >Q12 |
1250 (60.9%) 2.0Mb |
| >Q15 |
140 (6.8%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (1635) |
| 2 |
17.0 (741) |
| 3 |
16.9 (1286) |
| 4 |
16.8 (1391) |
| 5 |
16.7 (1827) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5096 (12.7) |
| 2 |
4288 (12.9) |
| 3 |
4272 (11.3) |
| 4 |
3889 (13.9) |
| 5 |
3881 (13.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot