NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,343.0 |
| Mean read quality |
12.7 |
| Median read length |
2,316.0 |
| Median read quality |
13.8 |
| Number of reads |
44,052.0 |
| Read length N50 |
2,470.0 |
| STDEV read length |
627.2 |
| Total bases |
103,213,196.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
44052 (100.0%) 103.2Mb |
| >Q7 |
44052 (100.0%) 103.2Mb |
| >Q10 |
42709 (97.0%) 100.4Mb |
| >Q12 |
35512 (80.6%) 84.4Mb |
| >Q15 |
9763 (22.2%) 24.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.0 (3789) |
| 2 |
19.0 (3377) |
| 3 |
18.9 (2938) |
| 4 |
18.9 (3154) |
| 5 |
18.8 (3323) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7083 (10.9) |
| 2 |
6960 (14.3) |
| 3 |
6651 (11.0) |
| 4 |
6415 (9.7) |
| 5 |
6390 (11.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot