NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,407.1 |
| Mean read quality |
12.9 |
| Median read length |
2,372.0 |
| Median read quality |
14.0 |
| Number of reads |
245,290.0 |
| Read length N50 |
2,463.0 |
| STDEV read length |
478.7 |
| Total bases |
590,446,642.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
245290 (100.0%) 590.4Mb |
| >Q7 |
245290 (100.0%) 590.4Mb |
| >Q10 |
238932 (97.4%) 575.5Mb |
| >Q12 |
204229 (83.3%) 493.8Mb |
| >Q15 |
68422 (27.9%) 168.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.6 (2612) |
| 2 |
19.6 (2394) |
| 3 |
19.5 (2005) |
| 4 |
19.5 (2488) |
| 5 |
19.4 (1989) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10313 (12.1) |
| 2 |
7768 (10.3) |
| 3 |
7239 (12.6) |
| 4 |
7171 (13.6) |
| 5 |
7159 (9.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot