NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,339.2 |
| Mean read quality |
12.6 |
| Median read length |
2,292.0 |
| Median read quality |
13.7 |
| Number of reads |
132,216.0 |
| Read length N50 |
2,462.0 |
| STDEV read length |
651.7 |
| Total bases |
309,277,749.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
132216 (100.0%) 309.3Mb |
| >Q7 |
132216 (100.0%) 309.3Mb |
| >Q10 |
128059 (96.9%) 300.0Mb |
| >Q12 |
105474 (79.8%) 249.0Mb |
| >Q15 |
26078 (19.7%) 64.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.1 (2551) |
| 2 |
19.1 (2688) |
| 3 |
18.9 (2686) |
| 4 |
18.9 (2783) |
| 5 |
18.7 (3235) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8997 (15.1) |
| 2 |
7291 (14.7) |
| 3 |
7219 (11.4) |
| 4 |
7190 (14.4) |
| 5 |
7160 (9.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot