NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,641.8 |
| Mean read quality |
12.8 |
| Median read length |
2,598.0 |
| Median read quality |
13.9 |
| Number of reads |
499,741.0 |
| Read length N50 |
2,736.0 |
| STDEV read length |
615.8 |
| Total bases |
1,320,195,515.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
499741 (100.0%) 1320.2Mb |
| >Q7 |
499741 (100.0%) 1320.2Mb |
| >Q10 |
486624 (97.4%) 1286.4Mb |
| >Q12 |
412005 (82.4%) 1093.7Mb |
| >Q15 |
122275 (24.5%) 331.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.9 (2159) |
| 2 |
19.8 (3855) |
| 3 |
19.8 (3778) |
| 4 |
19.7 (2284) |
| 5 |
19.7 (2466) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
18476 (14.5) |
| 2 |
13526 (14.8) |
| 3 |
10343 (15.0) |
| 4 |
10189 (14.2) |
| 5 |
9874 (10.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot