NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,888.0 |
| Mean read quality |
12.7 |
| Median read length |
1,881.0 |
| Median read quality |
13.8 |
| Number of reads |
3,410.0 |
| Read length N50 |
1,951.0 |
| STDEV read length |
385.3 |
| Total bases |
6,438,169.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3410 (100.0%) 6.4Mb |
| >Q7 |
3410 (100.0%) 6.4Mb |
| >Q10 |
3325 (97.5%) 6.3Mb |
| >Q12 |
2781 (81.6%) 5.3Mb |
| >Q15 |
754 (22.1%) 1.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.3 (1962) |
| 2 |
18.1 (2640) |
| 3 |
17.9 (1656) |
| 4 |
17.9 (3187) |
| 5 |
17.9 (2243) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3539 (14.9) |
| 2 |
3263 (15.3) |
| 3 |
3251 (12.7) |
| 4 |
3234 (14.7) |
| 5 |
3227 (17.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot