NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,824.4 |
| Mean read quality |
12.4 |
| Median read length |
3,500.0 |
| Median read quality |
13.5 |
| Number of reads |
827.0 |
| Read length N50 |
3,826.0 |
| STDEV read length |
1,649.6 |
| Total bases |
2,335,798.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
827 (100.0%) 2.3Mb |
| >Q7 |
827 (100.0%) 2.3Mb |
| >Q10 |
778 (94.1%) 2.3Mb |
| >Q12 |
587 (71.0%) 2.0Mb |
| >Q15 |
219 (26.5%) 0.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.8 (3639) |
| 2 |
18.5 (3334) |
| 3 |
18.3 (3791) |
| 4 |
18.2 (4945) |
| 5 |
18.0 (4317) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5451 (13.8) |
| 2 |
5425 (15.9) |
| 3 |
5393 (15.8) |
| 4 |
5382 (14.4) |
| 5 |
5342 (11.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot