NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,573.2 |
| Mean read quality |
12.9 |
| Median read length |
2,572.0 |
| Median read quality |
14.0 |
| Number of reads |
36,923.0 |
| Read length N50 |
2,726.0 |
| STDEV read length |
649.2 |
| Total bases |
95,009,457.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
36923 (100.0%) 95.0Mb |
| >Q7 |
36923 (100.0%) 95.0Mb |
| >Q10 |
35910 (97.3%) 92.6Mb |
| >Q12 |
30347 (82.2%) 79.1Mb |
| >Q15 |
10769 (29.2%) 28.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.7 (2344) |
| 2 |
19.6 (3610) |
| 3 |
19.6 (2172) |
| 4 |
19.4 (3299) |
| 5 |
19.4 (3549) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8730 (9.4) |
| 2 |
8672 (12.7) |
| 3 |
7542 (10.1) |
| 4 |
7518 (13.0) |
| 5 |
6143 (15.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot