NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,813.3 |
| Mean read quality |
12.4 |
| Median read length |
2,045.0 |
| Median read quality |
13.4 |
| Number of reads |
3,403.0 |
| Read length N50 |
2,484.0 |
| STDEV read length |
1,005.2 |
| Total bases |
6,170,762.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3403 (100.0%) 6.2Mb |
| >Q7 |
3403 (100.0%) 6.2Mb |
| >Q10 |
3255 (95.7%) 6.0Mb |
| >Q12 |
2514 (73.9%) 5.0Mb |
| >Q15 |
714 (21.0%) 1.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.6 (3199) |
| 2 |
19.1 (3071) |
| 3 |
19.0 (3320) |
| 4 |
18.9 (3421) |
| 5 |
18.9 (2085) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4207 (15.8) |
| 2 |
3982 (14.3) |
| 3 |
3948 (9.9) |
| 4 |
3946 (18.0) |
| 5 |
3922 (14.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot