NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,871.4 |
| Mean read quality |
12.4 |
| Median read length |
2,971.5 |
| Median read quality |
13.4 |
| Number of reads |
4,988.0 |
| Read length N50 |
3,116.0 |
| STDEV read length |
842.7 |
| Total bases |
14,322,633.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4988 (100.0%) 14.3Mb |
| >Q7 |
4988 (100.0%) 14.3Mb |
| >Q10 |
4796 (96.2%) 13.9Mb |
| >Q12 |
3730 (74.8%) 11.3Mb |
| >Q15 |
772 (15.5%) 2.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.5 (3555) |
| 2 |
18.1 (1695) |
| 3 |
18.1 (3459) |
| 4 |
18.1 (3052) |
| 5 |
17.8 (3212) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7883 (15.9) |
| 2 |
7766 (13.4) |
| 3 |
7392 (14.2) |
| 4 |
6580 (11.1) |
| 5 |
6248 (12.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot