NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,855.9 |
| Mean read quality |
12.5 |
| Median read length |
3,003.0 |
| Median read quality |
13.7 |
| Number of reads |
695.0 |
| Read length N50 |
3,719.0 |
| STDEV read length |
1,466.3 |
| Total bases |
1,984,867.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
695 (100.0%) 2.0Mb |
| >Q7 |
695 (100.0%) 2.0Mb |
| >Q10 |
665 (95.7%) 1.9Mb |
| >Q12 |
518 (74.5%) 1.7Mb |
| >Q15 |
170 (24.5%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.9 (4576) |
| 2 |
18.6 (2399) |
| 3 |
18.0 (2359) |
| 4 |
18.0 (2339) |
| 5 |
17.9 (2760) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8094 (11.5) |
| 2 |
6565 (15.0) |
| 3 |
6530 (15.5) |
| 4 |
6521 (13.4) |
| 5 |
6469 (13.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot