NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,730.9 |
| Mean read quality |
13.1 |
| Median read length |
3,675.0 |
| Median read quality |
14.1 |
| Number of reads |
3,021.0 |
| Read length N50 |
3,986.0 |
| STDEV read length |
1,093.1 |
| Total bases |
11,271,093.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3021 (100.0%) 11.3Mb |
| >Q7 |
3021 (100.0%) 11.3Mb |
| >Q10 |
2946 (97.5%) 11.0Mb |
| >Q12 |
2559 (84.7%) 9.6Mb |
| >Q15 |
967 (32.0%) 3.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.6 (3172) |
| 2 |
18.9 (5044) |
| 3 |
18.9 (3097) |
| 4 |
18.9 (4579) |
| 5 |
18.8 (2041) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10018 (13.2) |
| 2 |
7787 (11.8) |
| 3 |
7157 (14.2) |
| 4 |
6725 (15.7) |
| 5 |
6720 (14.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot