NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
507.1 |
| Mean read quality |
10.2 |
| Median read length |
402.0 |
| Median read quality |
10.7 |
| Number of reads |
7,253.0 |
| Read length N50 |
450.0 |
| STDEV read length |
457.3 |
| Total bases |
3,678,109.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
7253 (100.0%) 3.7Mb |
| >Q7 |
7253 (100.0%) 3.7Mb |
| >Q10 |
5523 (76.1%) 3.0Mb |
| >Q12 |
997 (13.7%) 1.0Mb |
| >Q15 |
117 (1.6%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.4 (1274) |
| 2 |
17.8 (1899) |
| 3 |
17.7 (1906) |
| 4 |
17.5 (2100) |
| 5 |
17.4 (2874) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5740 (14.8) |
| 2 |
4986 (14.8) |
| 3 |
4725 (10.6) |
| 4 |
4286 (14.7) |
| 5 |
4234 (14.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot