NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,266.7 |
| Mean read quality |
13.3 |
| Median read length |
3,345.0 |
| Median read quality |
14.5 |
| Number of reads |
1,671.0 |
| Read length N50 |
3,516.0 |
| STDEV read length |
1,072.6 |
| Total bases |
5,458,714.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1671 (100.0%) 5.5Mb |
| >Q7 |
1671 (100.0%) 5.5Mb |
| >Q10 |
1625 (97.2%) 5.3Mb |
| >Q12 |
1410 (84.4%) 4.8Mb |
| >Q15 |
679 (40.6%) 2.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.8 (3300) |
| 2 |
19.6 (4904) |
| 3 |
19.3 (3165) |
| 4 |
19.2 (3028) |
| 5 |
19.1 (3345) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6878 (15.6) |
| 2 |
5801 (13.6) |
| 3 |
5732 (13.2) |
| 4 |
5729 (14.7) |
| 5 |
5710 (13.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot