NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,715.5 |
| Mean read quality |
13.1 |
| Median read length |
3,685.0 |
| Median read quality |
14.2 |
| Number of reads |
292,640.0 |
| Read length N50 |
3,922.0 |
| STDEV read length |
938.9 |
| Total bases |
1,087,303,231.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
292640 (100.0%) 1087.3Mb |
| >Q7 |
292640 (100.0%) 1087.3Mb |
| >Q10 |
285483 (97.6%) 1061.1Mb |
| >Q12 |
246334 (84.2%) 916.9Mb |
| >Q15 |
96101 (32.8%) 354.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.0 (3550) |
| 2 |
21.0 (4912) |
| 3 |
20.8 (3893) |
| 4 |
20.8 (3581) |
| 5 |
20.7 (5231) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11854 (12.8) |
| 2 |
11138 (10.4) |
| 3 |
10790 (14.3) |
| 4 |
10723 (11.3) |
| 5 |
10595 (15.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot