NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,348.4 |
| Mean read quality |
12.1 |
| Median read length |
1,378.0 |
| Median read quality |
13.1 |
| Number of reads |
1,109.0 |
| Read length N50 |
1,500.0 |
| STDEV read length |
488.5 |
| Total bases |
1,495,404.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1109 (100.0%) 1.5Mb |
| >Q7 |
1109 (100.0%) 1.5Mb |
| >Q10 |
1058 (95.4%) 1.4Mb |
| >Q12 |
808 (72.9%) 1.2Mb |
| >Q15 |
95 (8.6%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.2 (1295) |
| 2 |
17.9 (1074) |
| 3 |
17.3 (1626) |
| 4 |
16.9 (1609) |
| 5 |
16.8 (1496) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4304 (10.2) |
| 2 |
3037 (11.1) |
| 3 |
2859 (12.2) |
| 4 |
2768 (14.5) |
| 5 |
2709 (10.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot