NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,045.1 |
| Mean read quality |
13.3 |
| Median read length |
1,985.0 |
| Median read quality |
14.4 |
| Number of reads |
66,027.0 |
| Read length N50 |
2,113.0 |
| STDEV read length |
514.9 |
| Total bases |
135,029,095.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
66027 (100.0%) 135.0Mb |
| >Q7 |
66027 (100.0%) 135.0Mb |
| >Q10 |
64952 (98.4%) 132.9Mb |
| >Q12 |
57934 (87.7%) 119.0Mb |
| >Q15 |
23274 (35.2%) 49.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.0 (2438) |
| 2 |
19.7 (1738) |
| 3 |
19.7 (2477) |
| 4 |
19.6 (1528) |
| 5 |
19.6 (2879) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7633 (16.8) |
| 2 |
7616 (12.4) |
| 3 |
7509 (9.9) |
| 4 |
6331 (13.0) |
| 5 |
6025 (10.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot