NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,533.5 |
| Mean read quality |
12.0 |
| Median read length |
1,631.0 |
| Median read quality |
12.5 |
| Number of reads |
30.0 |
| Read length N50 |
2,862.0 |
| STDEV read length |
1,145.4 |
| Total bases |
46,005.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
30 (100.0%) 0.0Mb |
| >Q7 |
30 (100.0%) 0.0Mb |
| >Q10 |
29 (96.7%) 0.0Mb |
| >Q12 |
23 (76.7%) 0.0Mb |
| >Q15 |
1 (3.3%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.3 (1690) |
| 2 |
14.8 (2880) |
| 3 |
14.7 (2077) |
| 4 |
14.7 (2884) |
| 5 |
14.1 (3285) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3301 (14.0) |
| 2 |
3285 (14.1) |
| 3 |
3284 (12.9) |
| 4 |
3257 (12.1) |
| 5 |
2912 (13.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot