NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
942.8 |
| Mean read quality |
11.0 |
| Median read length |
478.5 |
| Median read quality |
11.4 |
| Number of reads |
222.0 |
| Read length N50 |
2,039.0 |
| STDEV read length |
870.5 |
| Total bases |
209,296.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
222 (100.0%) 0.2Mb |
| >Q7 |
222 (100.0%) 0.2Mb |
| >Q10 |
194 (87.4%) 0.2Mb |
| >Q12 |
84 (37.8%) 0.1Mb |
| >Q15 |
19 (8.6%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.8 (2812) |
| 2 |
16.7 (2778) |
| 3 |
16.7 (2821) |
| 4 |
16.6 (2777) |
| 5 |
16.2 (2043) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3685 (14.7) |
| 2 |
3222 (14.3) |
| 3 |
3167 (15.4) |
| 4 |
3043 (13.0) |
| 5 |
2934 (14.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot