NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,545.0 |
| Mean read quality |
12.5 |
| Median read length |
3,362.5 |
| Median read quality |
13.5 |
| Number of reads |
662.0 |
| Read length N50 |
3,739.0 |
| STDEV read length |
1,184.7 |
| Total bases |
2,346,765.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
662 (100.0%) 2.3Mb |
| >Q7 |
662 (100.0%) 2.3Mb |
| >Q10 |
642 (97.0%) 2.3Mb |
| >Q12 |
507 (76.6%) 1.8Mb |
| >Q15 |
109 (16.5%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.7 (6344) |
| 2 |
17.5 (2571) |
| 3 |
17.2 (5973) |
| 4 |
17.2 (5997) |
| 5 |
17.0 (5591) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8805 (15.0) |
| 2 |
8061 (14.6) |
| 3 |
8046 (14.7) |
| 4 |
8012 (14.7) |
| 5 |
7446 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot