NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,092.2 |
| Mean read quality |
11.5 |
| Median read length |
1,055.0 |
| Median read quality |
11.9 |
| Number of reads |
75.0 |
| Read length N50 |
4,006.0 |
| STDEV read length |
1,879.3 |
| Total bases |
156,917.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
75 (100.0%) 0.2Mb |
| >Q7 |
75 (100.0%) 0.2Mb |
| >Q10 |
72 (96.0%) 0.2Mb |
| >Q12 |
34 (45.3%) 0.1Mb |
| >Q15 |
10 (13.3%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.1 (3859) |
| 2 |
16.1 (1881) |
| 3 |
16.0 (3003) |
| 4 |
15.9 (4000) |
| 5 |
15.7 (3247) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6224 (10.2) |
| 2 |
6183 (14.3) |
| 3 |
5667 (15.0) |
| 4 |
5593 (13.0) |
| 5 |
5533 (15.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot