NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,381.7 |
| Mean read quality |
12.0 |
| Median read length |
666.0 |
| Median read quality |
13.0 |
| Number of reads |
71.0 |
| Read length N50 |
2,380.0 |
| STDEV read length |
1,065.3 |
| Total bases |
98,099.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
71 (100.0%) 0.1Mb |
| >Q7 |
71 (100.0%) 0.1Mb |
| >Q10 |
67 (94.4%) 0.1Mb |
| >Q12 |
44 (62.0%) 0.1Mb |
| >Q15 |
14 (19.7%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.5 (3021) |
| 2 |
16.8 (2686) |
| 3 |
16.7 (1795) |
| 4 |
16.3 (1956) |
| 5 |
16.3 (2594) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4013 (15.4) |
| 2 |
3263 (11.3) |
| 3 |
3161 (12.9) |
| 4 |
3021 (17.5) |
| 5 |
2999 (13.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot