NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,164.8 |
| Mean read quality |
13.0 |
| Median read length |
2,083.0 |
| Median read quality |
14.0 |
| Number of reads |
16,232.0 |
| Read length N50 |
2,229.0 |
| STDEV read length |
579.0 |
| Total bases |
35,138,995.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
16232 (100.0%) 35.1Mb |
| >Q7 |
16232 (100.0%) 35.1Mb |
| >Q10 |
15932 (98.2%) 34.5Mb |
| >Q12 |
14025 (86.4%) 30.5Mb |
| >Q15 |
3765 (23.2%) 8.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.5 (1796) |
| 2 |
19.4 (1975) |
| 3 |
19.4 (3465) |
| 4 |
19.2 (2973) |
| 5 |
19.0 (2901) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8492 (9.6) |
| 2 |
7000 (9.6) |
| 3 |
6336 (14.8) |
| 4 |
6042 (13.5) |
| 5 |
5548 (10.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot