NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,052.4 |
| Mean read quality |
13.0 |
| Median read length |
3,075.0 |
| Median read quality |
14.0 |
| Number of reads |
3,825.0 |
| Read length N50 |
3,273.0 |
| STDEV read length |
846.1 |
| Total bases |
11,675,538.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3825 (100.0%) 11.7Mb |
| >Q7 |
3825 (100.0%) 11.7Mb |
| >Q10 |
3719 (97.2%) 11.4Mb |
| >Q12 |
3299 (86.2%) 10.3Mb |
| >Q15 |
997 (26.1%) 3.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.7 (2826) |
| 2 |
18.3 (3212) |
| 3 |
18.3 (3632) |
| 4 |
18.0 (2973) |
| 5 |
18.0 (4002) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7525 (14.3) |
| 2 |
5873 (12.3) |
| 3 |
5849 (14.4) |
| 4 |
5813 (13.4) |
| 5 |
5691 (13.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot