NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,831.5 |
| Mean read quality |
12.9 |
| Median read length |
2,777.5 |
| Median read quality |
13.9 |
| Number of reads |
1,824.0 |
| Read length N50 |
3,160.0 |
| STDEV read length |
1,064.8 |
| Total bases |
5,164,719.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1824 (100.0%) 5.2Mb |
| >Q7 |
1824 (100.0%) 5.2Mb |
| >Q10 |
1789 (98.1%) 5.1Mb |
| >Q12 |
1546 (84.8%) 4.5Mb |
| >Q15 |
412 (22.6%) 1.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.2 (3667) |
| 2 |
18.9 (2826) |
| 3 |
18.3 (2906) |
| 4 |
18.2 (2739) |
| 5 |
18.1 (2646) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6678 (15.6) |
| 2 |
6260 (12.4) |
| 3 |
6009 (13.3) |
| 4 |
5997 (13.1) |
| 5 |
5966 (12.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot